We had a problem like this several years ago. Turned out to be a problem with the hot water heater. It was something like defective plastic pipe that had disintegrated - a manufacturing defect that resulted in a class action lawsuit - that, of course, we were too late to persue. Had to replace the water heater and pay a few hundred dollars to rectify the rest of the damage.
This probably isn't your issue, but thought I'd throw it out in case other solutions don't clear up the problem.